PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G151700.1
Common NameB456_001G151700, LOC105771003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 503aa    MW: 56111.2 Da    PI: 5.0175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G151700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12322367454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Gorai.001G151700.1 322 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 367
                         799***********************6.....4***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.5E-5426208IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.015318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17319380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-14321372No hitNo description
Gene3DG3DSA:4.10.280.101.4E-16322380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-10322367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-16324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEELIISPSS SSSLVYMTQE TSPSTLQQRL QFVVQSQQIW WTYAIFWQTS NDEHGRLYLC  60
WGDGYFQGTT KGTPPKLLSA NNSCLENERR KEMKGAQTLI RDNHEVDVSM MDGTTGVSDA  120
VWFYVMSLTR SFPAGEGIPG MALSTGSLVW LTGAHALQFY NCERAIEAQM HGIETMVCIP  180
TSCGVLELGS VEMISENWGL VQQVKSLFGA DPIDLVQKQS STDPTLTPPS IPFLDRNISF  240
ADIGIISGVE EEEEDVGPDN ETKQEHHNHP TKKYFTKLGQ SSSVDSEHSD SDRPSLAMSH  300
LEQKTPQKRG RKPGLGRETP LNHVEAERQR REKLNHRFYA LRAVVPNVSR MDKASLLSDA  360
VSYINELKAK IEELESQLQR ECKKPKVEMV DVTDNHSTTT SVEQEAAKPD NSPSPATAGC  420
VGLEFDIKIM GNDAMIRVQS ENANYPVTRL MVALRDLEFP IHHASMSCVN ETMLQDIVVN  480
VPDLELRNEQ GLKSALLRRL DH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A9e-34252088192Transcription factor MYC3
4rs9_A9e-34252088192Transcription factor MYC3
4rqw_B9e-34252088192Transcription factor MYC3
4rqw_A9e-34252088192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6158010.0JX615801.1 Gossypium hirsutum clone NBRI_GE60007 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447848.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A0D2QQW60.0A0A0D2QQW6_G
STRINGPOPTR_0002s17750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.13e-64NACL-inducible gene 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]